I was wondering if anyone could give me any information on where Biztalk stores filenames of EDI files that are processed. I know it stores it somewhere since I can't process the same file again because it views it as a duplicate file.
Have a look at the BizTalkEDIDb database and the audin/audout tables. If you are using the Hipaa Accelerator then the database name is BizTalkHIPAA_EDIDb rather than BizTalkEDIDb. There are columns in these tables that contain the EDI control niumber that was mentioned.
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