I would suggest using the WCF SQL Adapter in BizTalk 2009 to call stored procedures from the database. Here’s a BizTalkGurus blog showing you how to use that:
Since you are using BizTalk 2009, is there any reason why you don’t want to use WCF SQL adapter to fetch data from a database? Some other alternatives would be:
1. Wrap your database call in a .NET assembly and call that assembly from a BizTalk orchestration.
2. Wrap your database call in a Web Service (SOAP or WCF) and call that service from a BizTalk orchestration.
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