I often get asked about best practice for deploying and migrating BTS applications.  In 2004 I used Scott Colestocks Deployment Framework for BizTalk which worked well.  In 2006, there is a bit more build in flexibility and support for variables with MSI installer cababilities.  See the Selective Binding Import SDK example.

For more deployment best practice advice see:

“Deploying and Managing BizTalk Applications“


“Best Practices for Deploying a BizTalk Application”: